Publicaciones

Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes Nature Ecology & Evolution [https://doi.org/10.1038/s41559-025-02941-y]

Enhancing R-loop prediction with high throughput sequencing data NAR Genomics and Bioinformatics [https://doi.org/10.1093/nargab/lqaf077] *
Epigenomic signatures of cis-regulatory elements in the developing mouse and pig forelimb Scientific Data [https://doi.org/10.1038/s41597-025-04946-5]
Enhanced RNA-targeting CRISPR-Cas technology in zebrafish Nature Communications [https://doi.org/10.1038/s41467-025-57792-9]
Application of XAI to the prediction of CTCF binding sites Results in Engineering [https://doi.org/10.1016/j.rineng.2024.103776] *

Modulation of AAV transduction and integration targeting by topoisomerase poisons Molecular Therapy Methods & Clinical Development [https://doi.org/10.1016/j.omtm.2024.101364]
Chromosome-level genome assemblies of two hemichordates provide new insights into deuterostome origin and chromosome evolution PLOS Biology [https://doi.org/10.1371/journal.pbio.3002661]
Comparative 3D genome analysis between neural retina and RPE reveals differential cis-regulatory interactions at retinal disease loci Genome Biology [https://doi.org/10.1186/s13059-024-03250-6] #
Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development Nucleic Acids Research [https://doi.org/10.1093/nar/gkae065]

The little skate genome and the evolutionary emergence of wing-like fin appendages Nature [https://doi.org/10.1016/j.dib.2022.108499]

Data of transcriptional effects of the merbarone-mediated inhibition of TOP2 Data in Brief [https://doi.org/10.1016/j.celrep.2021.108977]

Topoisomerase IIα represses transcription by enforcing promoter-proximal pausing Cell Reports [https://doi.org/10.1016/j.celrep.2021.108977]
Genome-wide prediction of topoisomerase IIβ binding by architectural factors and chromatin accessibility PLOS Computational Biology [https://doi.org/10.1371/journal.pcbi.1007814] # *

Blue light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression enabling efficient plant infection Molecular Plant Pathology [https://doi.org/10.1111/mpp.13001]
A comparative study of supervised machine learning algorithms for the prediction of long range chromatin interactions Genes [https://doi.org/10.3390/genes11090985] *
Endogenous topoisomerase II-mediated DNA breaks drive thymic cancer predisposition linked to ATM deficiency Nature Communications [https://doi.org/10.1038/s41467-020-14638-w]

The Pseudomonas syringae pv. tomato DC3000 PSPTO_0820 multidrug transporter is involved in resistance to plant antimicrobials and bacterial survival during tomato plant infection PLOS One [https://doi.org/10.1371/journal.pone.0218815]

Pseudomonas syringae pv. tomato exploits light signals to optimize virulence and colonization of leaves Environmental microbiology [https://doi.org/10.1111/1462-2920.14331]
Analysis of Relevance and Redundance on Topoisomerase 2b (TOP2B) Binding Sites: A Feature Selection Approach Lecture Notes in Computer Science [https://doi.org/10.1007/978-3-319-77538-8_7] #

Four genes essential for recombination define GInts, a new type of mobile genomic island widespread in bacteria Scientific Reports [https://doi.org/10.1038/srep46254]

Prediction of bacterial associations with plants using a supervised machine-learning approach Environmental microbiology [https://doi.org/10.1111/1462-2920.13389] #

Comparative Genomics Within the Bacillus Genus Reveal the Singularities of Two Robust Bacillus amyloliquefaciens Biocontrol Strains Molecular Plant Microbe Interactions [https://pubmed.ncbi.nlm.nih.gov/26035127]
Bioinformatics Analysis of the Complete Genome Sequence of the Mango Tree Pathogen Pseudomonas syringae pv. syringae UMAF0158 Reveals Traits Relevant to Virulence and Epiphytic Lifestyle PLOS One [https://doi.org/10.1371/journal.pone.0136101] #
T346Hunter: a novel web-based tool for the prediction of type III, type IV and type VI secretion systems in bacterial genomes PLOS One [https://doi.org/10.1371/journal.pone.0119317] #
Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae Standards in Genomic Sciences [https://doi.org/10.1186/1944-3277-10-10] #

Role of Dickeya dadantii 3937 chemoreceptors in the entry to Arabidopsis leaves through wounds Molecular Plant Pathology [https://doi.org/10.1111/mpp.12227]

Light regulates motility, attachment and virulence in the plant pathogen Pseudomonas syringae pv tomato DC3000 Environmental Microbiology [https://doi.org/10.1111/1462-2920.12240]